PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g060760.1
Common NameMTR_2g060760
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 720aa    MW: 79084.4 Da    PI: 10.1327
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g060760.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-102170446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46
                     W t+E++ll+ av ++G ++W+tIa +++       +  t+ +c  ++++
  Medtr2g060760.1 21 WGTWEELLLASAVDRHGFKDWDTIAMEVQsrtnrtsLLATAHHCEQKFHD 70
                     *****************************998888888888888888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-41454IPR009057Homeodomain-like
CDDcd001678.19E-52152No hitNo description
PfamPF002491.9E-82170IPR001005SANT/Myb domain
SMARTSM002972.0E-11334444IPR001487Bromodomain
SuperFamilySSF473701.44E-14343442IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.1E-13347442IPR001487Bromodomain
PfamPF004391.6E-7348429IPR001487Bromodomain
CDDcd043692.56E-12348439No hitNo description
PROSITE profilePS5001410.926353425IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MNDMENHQNQ NKNPNQDLQG WGTWEELLLA SAVDRHGFKD WDTIAMEVQS RTNRTSLLAT  60
AHHCEQKFHD LNRRFKDDVP PPQQNGDVSA VTAEDSDHVP WLDKLRKQRV AELRRDVQLS  120
DVSILSLQLQ VKKLEDEKAK ENEEKVETEP DLAVSGEGRL PENEKTGGDI DEPVPAIRRL  180
DESTTNTDKL LPAAGEESDR DNQSVNESNS TGSRFDALKT GEVDVKLGSG PGHGSGSVQV  240
KSGLNEPDQT GRKRKSVEEE SNNGSYDNNE AKAVTCESVP PSEERKVEDD SVTRSEGGGT  300
RESSEVQSSS SLSKTRRTQR RRKEVSGEDA KMENEDVAVV KSEPLFGVLE MIKRHQKFSL  360
FERRLEKNQD LDRYKNTVKR HVDLETIQLR VQEGHYSSGT NTFFLDLVTL FSNATVFFSR  420
GSPELRAAQQ LRRLILDEMK TFGQAQSNTI TQKSDSLPPN TPLSRPDSLS KHKPPILVCR  480
KRSSIPVKPS TTTFSHKGDH KPIINDKKER PSSDVKPTLK PSYSETDEEE PPKAKEKPVT  540
GARSRRSNKN LSSNASNKKP PSNSTPRTGS SANKPAETPK LKNKAEGVSD KKKNNGAAGF  600
LNRIKKNESV EVLRSGSGGG GGSSGSSKGG GGGGTNTKEQ KKVVNNGKGE KGKERASRYN  660
DGGGSGSGDK RNKNIESNSK RNVGRPPKKA AETVASTKRG RESSASGGKD KRPKKRSKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1710718KRPKKRSKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.246810.0glandular trichome| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467560.0AC146756.17 Medicago truncatula clone mth2-15l17, complete sequence.
GenBankAC1866430.0AC186643.3 Medicago truncatula chromosome 2 BAC clone mth2-58f20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595781.10.0DNA-binding bromodomain protein, putative
TrEMBLG7IJ060.0G7IJ06_MEDTR; DNA-binding bromodomain protein, putative
STRINGGLYMA08G15870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-67DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]